# Use the Tools

> Reference for Module 9: The Optimizer: where to run the module's tools (web platforms, Colab notebooks, local installs), which parameters matter, and what to check after a run.

Reference for Module 9: The Optimizer: where to run the module's tools (web platforms, Colab notebooks, local installs), which parameters matter, and what to check after a run.

## Links

- [Module 9: The Optimizer](https://proteindesign.academy/module/9)
- [Introduction](https://proteindesign.academy/module/9/intro)
- [9.1 Proteins in Motion](https://proteindesign.academy/module/9/1)
- [9.2 B-Factors and Flexibility](https://proteindesign.academy/module/9/2)
- [9.3 Structural Diagnostics](https://proteindesign.academy/module/9/3)
- [9.4 Energy Landscapes](https://proteindesign.academy/module/9/4)
- [9.5 Thermostability Engineering](https://proteindesign.academy/module/9/5)
- [9.integration The Guided Repair](https://proteindesign.academy/module/9/integration)
- [The Stability Optimizer](https://proteindesign.academy/module/9/capstone)